JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH23_chr10_71391920_71820947	0/0	t0029	1074	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0030	1069	1	0	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0031	1069	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0032	1076	1	0	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0033	1076	1	0	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0034	1076	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0035	1088	1	0	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH24_chr14_23042067_23062520	1/1	t0001	1070	205	21	41	122	7	12	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0002	1070	92	30	17	30	4	11	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0003	1071	31	2	7	18	0	4	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0004	1071	22	7	3	9	0	3	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0005	1070	20	11	3	0	1	5	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0006	1070	6	6	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0007	1070	6	0	5	0	0	1	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0008	1071	5	4	1	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0009	1070	5	4	1	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0010	1064	3	3	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0011	1070	3	2	0	0	0	1	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0012	1064	2	2	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0013	1070	2	0	0	2	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0014	1071	2	1	1	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0015	1070	1	0	0	0	0	1	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0016	1070	1	0	1	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0017	1070	1	0	0	1	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0018	1071	1	1	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0019	1070	1	0	0	0	0	1	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0020	1070	1	1	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0021	1070	1	0	0	1	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0022	1070	1	0	0	1	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0023	1070	1	1	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	t0024	1071	1	0	0	0	0	1	copy fasta	CDH24	chr14	23042067	23062520
CDH26_chr20_59953423_60019529	0/1	t0001	2103	90	3	23	49	3	11	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0002	2105	50	2	14	18	7	9	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	1/0	t0003	2104	41	0	3	35	0	2	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0004	2104	30	22	4	1	1	2	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0005	2105	12	6	1	4	0	1	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0006	2104	9	8	1	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0007	2104	9	9	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0008	2104	8	8	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0009	2104	4	4	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0010	2104	4	0	2	0	0	2	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0011	2104	3	3	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0012	2103	3	0	0	1	2	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0013	2104	2	0	0	2	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0014	2105	2	1	1	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0015	2104	2	1	0	0	0	1	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0016	2104	2	2	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0017	2104	2	0	0	0	1	1	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0018	2105	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0019	2103	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529