JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH26_chr20_59953423_60019529	0/0	t0020	2105	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0021	2103	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0022	2104	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0023	2103	1	0	1	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0024	2103	1	0	0	1	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0025	2104	1	0	1	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0026	2103	1	0	1	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0027	2103	1	0	0	1	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0028	2105	1	0	0	1	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0029	2103	1	0	0	1	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0030	2105	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0031	2104	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	t0032	2104	1	0	0	0	0	1	copy fasta	CDH26	chr20	59953423	60019529
CDH2_chr18_27945966_28182130	0/0	t0001	1294	67	8	7	35	4	13	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0002	1294	35	6	6	21	0	2	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0003	1296	28	7	10	3	3	5	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0004	1294	17	1	9	3	2	2	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0005	1295	13	11	1	1	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0006	1296	10	1	4	1	2	2	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/1	t0007	1295	10	5	1	1	0	2	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0008	1299	8	8	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0009	1290	8	0	0	7	1	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0010	1288	7	0	0	4	2	1	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0011	1299	6	5	0	0	0	1	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0012	1298	5	4	1	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0013	1294	4	3	1	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0014	1290	4	4	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0015	1302	4	4	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0016	1294	3	0	3	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	1/0	t0017	1296	3	1	1	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0018	1288	3	2	0	1	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0019	1294	2	0	0	2	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0020	1294	2	0	2	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0021	1295	2	1	0	0	0	1	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0022	1310	2	0	1	0	0	1	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0023	1302	2	2	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0024	1301	2	2	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0025	1297	2	0	1	1	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0026	1298	2	0	0	0	0	2	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0027	1289	2	0	0	1	0	1	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0028	1294	1	0	0	1	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0029	1300	1	0	0	1	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0030	1295	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0031	1313	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0032	1311	1	0	0	0	0	1	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0033	1297	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0034	1299	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0035	1299	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0036	1295	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0037	1294	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130