JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH2_chr18_27945966_28182130	0/0	t0038	1295	1	0	0	0	0	1	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0039	1294	1	0	0	1	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0040	1289	1	0	0	0	0	1	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0041	1302	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	t0042	1301	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH3_chr16_68640310_68705292	0/1	t0001	1964	99	10	25	51	5	7	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	1/0	t0002	1963	75	20	9	38	2	5	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0003	1961	57	1	16	28	2	10	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0004	1963	35	9	8	9	3	6	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0005	1963	17	15	1	0	0	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0006	1963	16	16	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0007	1961	11	11	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0008	1965	7	0	2	5	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0009	1964	4	0	0	2	0	2	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0010	1962	3	3	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0011	1962	2	1	0	1	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0012	1962	2	0	1	0	0	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0013	1963	1	0	0	0	0	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0014	1963	1	0	1	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0015	1963	1	0	1	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0016	1962	1	0	0	0	0	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0017	1979	1	0	0	0	0	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0018	1963	1	1	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0019	1963	1	0	0	0	0	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0020	1964	1	1	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0021	1964	1	0	0	1	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	t0022	1964	1	0	0	1	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH4_chr20_61247261_61945617	0/0	t0001	3927	12	9	2	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0002	3930	12	3	7	1	0	1	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0003	3927	5	4	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0004	3926	5	4	0	0	0	1	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0005	3922	4	3	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0006	3928	3	3	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0007	3927	3	0	2	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0008	3926	3	0	2	0	0	1	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0009	3927	3	3	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0010	3928	3	2	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0011	3926	3	1	1	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0012	3924	2	0	1	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0013	3923	2	2	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0014	3927	2	0	0	1	0	1	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0015	3930	2	0	2	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0016	3926	2	0	1	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0017	3929	2	2	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0018	3927	2	2	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0019	3900	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0020	3924	1	0	0	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0021	3927	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0022	3928	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0023	3923	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617