JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH4_chr20_61247261_61945617	0/0	t0024	3923	1	0	0	0	0	1	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0025	3923	1	0	0	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0026	3927	1	0	0	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0027	3927	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0028	3928	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0029	3926	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0030	3927	1	0	0	0	0	1	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0031	3928	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0032	3926	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0033	3927	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0034	3927	1	0	0	0	0	1	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0035	3927	1	0	0	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0036	3927	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0037	3925	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0038	3926	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0039	3931	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0040	3926	1	0	0	0	0	1	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0041	3925	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0042	3931	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0043	3931	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0044	3930	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0045	3930	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0046	3931	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0047	3930	1	0	0	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0048	3930	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0049	3930	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0050	3930	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0051	3929	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0052	3929	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0053	3929	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	t0054	3929	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH5_chr16_66361691_66409784	0/1	t0001	1703	271	52	51	134	9	24	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	1/0	t0002	1703	91	22	16	27	6	19	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0003	1703	5	5	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0004	1703	5	0	4	0	0	1	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0005	1703	4	1	2	0	1	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0006	1703	4	0	0	4	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0007	1703	4	4	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0008	1703	2	2	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0009	1703	2	0	2	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0010	1703	2	0	0	1	0	1	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0011	1703	1	0	1	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0012	1703	1	0	1	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0013	1703	1	0	0	1	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0014	1703	1	1	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0015	1654	1	0	0	0	0	1	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0016	1703	1	0	0	0	0	1	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0017	1703	1	0	0	0	0	1	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0018	1703	1	0	0	1	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0019	1703	1	1	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784