JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH5_chr16_66361691_66409784	0/0	t0020	1703	1	0	0	1	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0021	1703	1	0	0	1	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0022	1703	1	1	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0023	1703	1	0	1	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	t0024	1703	1	1	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH6_chr5_31188686_31334146	0/0	t0001	6162	54	1	10	38	1	4	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0002	6166	49	9	7	25	5	3	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0003	6164	19	0	2	16	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0004	6156	18	12	0	0	0	6	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0005	6163	13	1	1	8	0	3	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0006	6164	11	0	3	8	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0007	6156	7	0	0	5	0	2	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0008	6161	7	0	1	2	0	4	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0009	6165	7	0	2	3	1	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0010	6167	7	0	3	3	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0011	6155	7	5	0	1	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0012	6168	6	0	2	3	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0013	6168	5	2	1	2	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/1	t0014	6165	5	3	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0015	6160	4	0	0	1	1	2	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0016	6155	3	0	0	2	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0017	6157	3	0	0	3	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0018	6165	3	0	1	2	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0019	6164	3	2	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0020	6166	3	0	1	2	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0021	6165	3	1	0	2	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0022	6166	3	3	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0023	6167	3	2	0	0	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0024	6166	2	2	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0025	6162	2	0	0	0	1	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0026	6161	2	0	1	0	1	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0027	6162	2	0	1	0	1	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0028	6164	2	0	2	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0029	6168	2	0	2	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0030	6170	2	0	0	2	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0031	6172	2	2	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0032	6166	2	2	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0033	6163	2	0	0	2	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0034	6171	2	1	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0035	6187	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0036	6167	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0037	6166	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0038	6156	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0039	6166	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0040	6158	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0041	6168	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0042	6163	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0043	6164	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0044	6164	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0045	6165	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146