Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AATK_chr17_81112295_81171221	0/1	t0001	1337	242	45	39	115	12	30	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	1/0	t0002	1337	68	11	23	25	1	7	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0003	1337	13	11	1	0	1	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0004	1333	10	8	2	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0005	1337	5	0	0	0	0	5	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0006	1337	5	2	1	2	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0007	1337	4	0	4	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0008	1337	3	3	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0009	1293	2	0	1	0	1	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0010	1337	2	1	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0011	1337	2	2	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0012	1337	2	2	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0013	1337	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0014	1337	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0015	1337	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0016	1337	1	0	0	0	1	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0017	1337	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0018	1337	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0019	1337	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0020	1337	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0021	1337	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	t0022	1337	1	0	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
ABAT_chr16_8669617_8789570	0/1	t0001	3277	94	18	17	43	3	12	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0002	3277	78	16	13	29	8	12	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0003	3277	75	12	15	38	1	9	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0004	3277	23	2	2	17	1	1	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0005	3277	14	2	8	1	0	3	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0006	3269	8	7	1	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0007	3276	8	8	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0008	3277	7	3	0	0	1	3	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0009	3277	4	0	0	4	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0010	3277	4	2	2	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0011	3277	4	4	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0012	3277	3	0	3	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0013	3277	2	2	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0014	3277	2	2	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0015	3277	2	0	0	2	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0016	3277	2	0	0	2	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0017	3277	2	0	0	2	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0018	3277	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0019	3276	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0020	3277	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0021	3277	1	0	1	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0022	3277	1	0	1	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0023	3277	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0024	3277	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0025	3277	1	0	1	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0026	3277	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0027	3277	1	0	1	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0028	3277	1	0	0	0	0	1	copy fasta	ABAT	chr16	8669617	8789570