JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH6_chr5_31188686_31334146	0/0	t0046	6165	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0047	6160	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0048	6162	1	0	0	0	1	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0049	6162	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0050	6162	1	0	0	0	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0051	6163	1	0	0	0	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0052	6166	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0053	6162	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0054	6160	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0055	6164	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0056	6163	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0057	6164	1	0	0	0	1	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0058	6164	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0059	6162	1	0	0	0	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0060	6163	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0061	6164	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0062	6166	1	0	0	0	1	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0063	6167	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0064	6169	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0065	6169	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0066	6154	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0067	6170	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0068	6171	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	1/0	t0069	6168	1	0	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0070	6169	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0071	6171	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0072	6169	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0073	6167	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0074	6166	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0075	6164	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0076	6165	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0077	6166	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0078	6167	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0079	6167	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0080	6164	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0081	6164	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0082	6170	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0083	6169	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0084	6171	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0085	6166	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0086	6163	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0087	6163	1	0	0	0	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0088	6164	1	0	0	0	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0089	6162	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0090	6160	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0091	6157	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0092	6156	1	0	0	0	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0093	6156	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0094	6156	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0095	6156	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146