JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH6_chr5_31188686_31334146	0/0	t0096	6156	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0097	6158	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0098	6160	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0099	6168	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0100	6169	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0101	6168	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0102	6162	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0103	6170	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0104	6167	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0105	6164	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0106	6168	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	t0107	6162	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH7_chr18_65746012_65895337	0/1	t0001	9788	22	1	6	5	2	7	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0002	9788	19	4	5	4	4	2	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0003	9776	9	4	2	0	0	3	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0004	9791	9	2	5	0	1	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0005	9789	7	1	1	2	0	3	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0006	9792	6	1	1	1	1	2	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0007	9789	5	0	1	3	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0008	9775	5	5	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0009	9789	5	0	3	0	2	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0010	9778	4	0	2	1	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0011	9788	3	3	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0012	9779	3	3	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0013	9791	3	0	1	1	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0014	9792	3	1	0	0	1	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0015	9777	3	2	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0016	9775	3	2	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0017	9772	3	3	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	1/0	t0018	9779	3	1	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0019	9793	3	2	0	1	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0020	9789	3	0	0	3	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0021	9779	2	2	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0022	9780	2	2	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0023	9793	2	0	2	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0024	9778	2	2	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0025	9776	2	2	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0026	9777	2	2	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0027	9781	2	0	0	0	2	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0028	9789	2	0	2	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0029	9777	2	1	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0030	9777	2	2	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0031	9778	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0032	9787	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0033	9788	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0034	9769	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0035	9779	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0036	9780	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0037	9780	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0038	9794	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337