JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH7_chr18_65746012_65895337	0/0	t0039	9793	1	0	0	1	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0040	9794	1	0	0	1	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0041	9789	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0042	9777	1	0	0	0	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0043	9787	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0044	9775	1	0	0	0	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0045	9776	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0046	9788	1	0	0	1	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0047	9788	1	0	0	1	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0048	9789	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0049	9788	1	0	0	0	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0050	9794	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0051	9780	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0052	9781	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0053	9788	1	0	0	0	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0054	9789	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0055	9789	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0056	9781	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0057	9777	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0058	9780	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0059	9778	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0060	9787	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0061	9788	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0062	9788	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0063	9789	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0064	9786	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0065	9788	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0066	9779	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0067	9779	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0068	9779	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0069	9780	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0070	9791	1	0	0	0	1	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0071	9792	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0072	9794	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0073	9772	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0074	9776	1	0	0	0	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0075	9777	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0076	9780	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0077	9776	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0078	9776	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0079	9786	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0080	9787	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0081	9787	1	0	0	1	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0082	9791	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0083	9788	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0084	9788	1	0	0	1	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0085	9786	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0086	9789	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0087	9789	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0088	9790	1	0	0	0	0	1	copy fasta	CDH7	chr18	65746012	65895337