JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH7_chr18_65746012_65895337	0/0	t0089	9772	1	0	0	1	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0090	9786	1	0	0	0	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0091	9788	1	0	0	1	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0092	9772	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0093	9772	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0094	9774	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0095	9788	1	0	0	1	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0096	9777	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	t0097	9776	1	0	0	0	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH8_chr16_61642250_62041438	1/0	t0001	6917	21	3	3	13	0	1	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0002	6918	17	0	5	11	0	1	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0003	6915	8	0	1	7	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0004	6928	7	0	3	2	1	1	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0005	6912	6	0	0	6	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0006	6897	6	0	1	4	0	1	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/1	t0007	6917	5	0	2	2	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0008	6897	5	5	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0009	6914	4	4	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0010	6918	3	3	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0011	6917	3	0	3	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0012	6919	3	0	1	2	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0013	6912	3	1	2	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0014	6924	3	3	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0015	6911	2	2	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0016	6920	2	2	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0017	6909	2	2	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0018	6917	2	0	0	0	2	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0019	6914	2	2	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0020	6928	2	2	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0021	6918	2	0	0	2	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0022	6897	2	0	0	2	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0023	6932	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0024	6920	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0025	6918	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0026	6913	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0027	6915	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0028	6917	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0029	6923	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0030	6913	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0031	6920	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0032	6928	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0033	6919	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0034	6914	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0035	6926	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0036	6915	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0037	6897	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0038	6914	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0039	6917	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0040	6900	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0041	6918	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438