JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH8_chr16_61642250_62041438	0/0	t0042	6920	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0043	6928	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0044	6926	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0045	6913	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0046	6917	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0047	6922	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0048	6910	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0049	6912	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0050	6913	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0051	6913	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0052	6921	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0053	6912	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0054	6912	1	0	0	0	0	1	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0055	6915	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0056	6919	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0057	6912	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0058	6914	1	0	0	0	0	1	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0059	6915	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0060	6917	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0061	6912	1	0	0	0	1	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0062	6912	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0063	6914	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0064	6914	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0065	6930	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0066	6918	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0067	6914	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0068	6914	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0069	6919	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0070	6916	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0071	6918	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0072	6918	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0073	6918	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0074	6918	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0075	6929	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0076	6928	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0077	6932	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0078	6915	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0079	6897	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	t0080	6897	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH9_chr5_26875597_27043586	1/1	t0001	713	230	79	46	70	9	24	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	t0002	713	7	0	6	0	1	0	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	t0003	713	2	2	0	0	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	t0004	713	1	1	0	0	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDHR1_chr10_84189537_84223694	1/0	t0001	4298	131	4	21	76	6	23	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0002	4298	70	3	14	44	3	6	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0003	4298	49	32	5	9	0	3	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0004	4298	21	3	8	1	3	6	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0005	4298	19	0	2	17	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/1	t0006	4298	17	6	9	0	1	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0007	4299	12	11	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694