JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDHR1_chr10_84189537_84223694	0/0	t0008	4298	5	0	0	5	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0009	4298	5	5	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0010	4298	4	0	4	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0011	4298	3	0	0	3	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0012	4299	3	3	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0013	4298	2	2	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0014	4298	2	0	0	0	2	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0015	4298	2	0	2	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0016	4298	2	0	1	0	1	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0017	4298	2	1	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0018	4298	2	2	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0019	4298	2	2	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0020	4298	2	2	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0021	4298	2	2	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0022	4298	2	2	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0023	4298	1	0	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0024	4298	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0025	4298	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0026	4298	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0027	4298	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0028	4298	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0029	4298	1	0	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0030	4298	1	0	0	1	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0031	4298	1	0	0	1	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0032	4298	1	0	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0033	4298	1	0	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0034	4298	1	0	0	1	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0035	4298	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0036	4298	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0037	4298	1	0	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0038	4298	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0039	4298	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0040	4298	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0041	4298	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0042	4298	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0043	4298	1	0	0	1	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0044	4298	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0045	4298	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0046	4298	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0047	4298	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0048	4298	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0049	4299	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0050	4298	1	0	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	t0051	4298	1	0	0	1	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR2_chr5_176544342_176600824	1/1	t0001	241	342	90	70	124	18	38	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	t0002	241	1	0	0	0	0	1	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	t0003	241	1	0	0	0	0	1	copy fasta	CDHR2	chr5	176544342	176600824
CDHR3_chr7_105958264_106041432	1/1	t0001	3791	188	26	27	112	3	18	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0002	3793	64	14	17	17	6	10	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0003	3793	23	6	3	12	0	2	copy fasta	CDHR3	chr7	105958264	106041432