JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDHR3_chr7_105958264_106041432	0/0	t0004	3793	17	2	5	4	2	4	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0005	3792	13	13	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0006	3793	9	7	1	0	0	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0007	3793	6	6	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0008	3790	4	0	1	2	1	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0009	3793	3	0	2	0	0	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0010	3794	2	1	0	0	0	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0011	3793	2	1	0	0	1	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0012	3793	2	0	2	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0013	3793	2	2	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0014	3791	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0015	3790	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0016	3793	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0017	3791	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0018	3791	1	0	1	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0019	3791	1	0	1	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0020	3791	1	0	0	0	1	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0021	3791	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0022	3791	1	0	0	0	0	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0023	3789	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0024	3791	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0025	3793	1	0	0	0	1	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0026	3793	1	0	1	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0027	3793	1	0	0	0	1	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0028	3795	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0029	3795	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0030	3793	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0031	3818	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0032	3791	1	0	1	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0033	3795	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0034	3793	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0035	3791	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	t0036	3793	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR4_chr3_49785732_49804873	1/1	t0001	162	354	94	66	134	16	42	copy fasta	CDHR4	chr3	49785732	49804873
CDHR5_chr11_611583_629955	0/0	t0001	822	286	41	43	150	10	42	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/1	t0002	822	77	37	25	6	5	3	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	t0003	822	21	2	3	12	1	3	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	t0004	822	21	16	5	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	t0005	822	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	t0006	822	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	t0007	822	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	t0008	822	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDIN1_chr15_36574626_36815244	0/1	t0001	2025	91	24	13	39	3	11	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0002	2025	66	11	19	22	4	10	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0003	2025	16	9	4	2	1	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0004	2025	12	4	4	3	0	1	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0005	2029	6	2	0	3	0	1	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	1/0	t0006	2027	5	4	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0007	2027	5	4	1	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0008	2022	4	4	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244