JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDIN1_chr15_36574626_36815244	0/0	t0009	2029	4	0	0	3	0	1	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0010	2022	3	2	1	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0011	2027	3	3	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0012	2031	2	0	0	1	1	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0013	2027	2	2	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0014	2027	2	2	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0015	2027	2	0	0	2	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0016	2027	2	2	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0017	2025	2	2	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0018	2027	1	0	0	1	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0019	2025	1	0	1	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0020	2025	1	0	0	0	1	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0021	2025	1	1	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0022	2025	1	0	1	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0023	2022	1	1	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0024	2025	1	1	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0025	2022	1	1	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0026	2027	1	1	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0027	2025	1	1	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	t0028	2027	1	1	0	0	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIP1_chr16_4505669_4543773	0/0	t0001	2080	143	38	25	62	5	13	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0002	2080	120	17	19	60	4	20	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/1	t0003	2080	25	17	5	1	1	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0004	2080	17	16	1	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0005	2080	4	4	0	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0006	2080	2	2	0	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0007	2080	2	2	0	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0008	2080	2	0	0	2	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0009	2080	1	0	0	1	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0010	2080	1	0	1	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0011	2080	1	1	0	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0012	2080	1	0	0	1	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0013	2080	1	1	0	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0014	2080	1	0	1	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0015	2080	1	0	0	0	0	1	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	t0016	2080	1	0	0	1	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIPT_chr16_29853357_29868226	1/0	t0001	1202	306	89	49	120	12	35	copy fasta	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	t0002	1202	4	4	0	0	0	0	copy fasta	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	t0003	1223	3	0	0	3	0	0	copy fasta	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	t0004	1202	3	0	1	0	0	2	copy fasta	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	t0005	1202	1	0	0	1	0	0	copy fasta	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	t0006	1202	1	1	0	0	0	0	copy fasta	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	t0007	1202	1	0	0	0	0	1	copy fasta	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/1	t0008	1202	1	0	0	0	0	0	copy fasta	CDIPT	chr16	29853357	29868226
CDK10_chr16_89681689_89701354	1/0	t0001	685	209	83	42	32	14	37	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0002	685	78	2	23	46	2	5	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/1	t0003	682	76	0	7	61	1	6	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0004	685	31	0	0	29	0	2	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0005	685	5	4	1	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0006	685	3	3	0	0	0	0	copy fasta	CDK10	chr16	89681689	89701354