JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK10_chr16_89681689_89701354	0/0	t0007	682	2	0	0	2	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0008	685	2	2	0	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0009	685	2	2	0	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0010	685	2	0	2	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0011	682	1	0	0	1	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0012	685	1	0	1	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0013	685	1	0	0	1	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0014	685	1	0	0	1	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0015	685	1	1	0	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0016	685	1	0	1	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0017	685	1	0	0	0	1	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0018	685	1	0	0	1	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0019	685	1	0	0	1	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0020	685	1	1	0	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0021	682	1	0	0	1	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	t0022	682	1	0	1	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK11A_chr1_1697379_1729357	1/1	t0001	642	194	10	46	101	11	24	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	t0002	642	74	31	5	32	0	6	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	t0003	642	64	5	12	39	3	5	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	t0004	642	15	13	2	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	t0005	642	7	0	0	7	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	t0006	656	6	1	1	4	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	t0007	642	4	4	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	t0008	642	2	2	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	t0009	642	2	2	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	t0010	656	2	1	0	0	0	1	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	t0011	642	1	0	0	1	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	t0012	656	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11B_chr1_1630225_1664004	0/0	t0001	644	178	26	32	85	6	29	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/1	t0002	630	136	19	20	79	4	13	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0003	630	56	26	8	20	0	2	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	1/0	t0004	644	18	0	9	1	6	1	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0005	644	18	13	1	4	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0006	644	12	0	0	12	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0007	630	6	0	0	6	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0008	630	6	4	0	1	0	1	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0009	630	4	3	1	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0010	630	3	3	0	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0011	630	3	2	1	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0012	630	2	0	0	2	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0013	644	2	2	0	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0014	630	1	1	0	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	t0015	644	1	1	0	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK12_chr17_39456486_39539544	0/1	t0001	3810	108	14	32	43	7	11	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	1/0	t0002	3815	21	7	2	6	3	2	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0003	3813	18	3	6	9	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0004	3819	8	6	0	2	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0005	3817	8	2	1	4	0	1	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0006	3812	7	2	1	2	0	2	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0007	3811	6	3	1	1	1	0	copy fasta	CDK12	chr17	39456486	39539544