JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK12_chr17_39456486_39539544	0/0	t0008	3809	4	1	0	3	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0009	3834	4	4	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0010	3838	3	2	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0011	3834	3	0	3	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0012	3830	3	0	1	2	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0013	3828	3	1	0	2	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0014	3816	3	1	2	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0015	3814	3	3	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0016	3810	3	3	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0017	3808	3	0	1	0	0	2	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0018	3842	2	1	0	0	0	1	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0019	3835	2	2	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0020	3833	2	2	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0021	3815	2	2	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0022	3814	2	1	0	0	1	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0023	3813	2	2	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0024	3810	2	0	0	2	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0025	3807	2	2	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0026	3796	2	0	2	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0027	3811	2	0	1	0	1	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0028	3817	1	0	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0029	3815	1	0	1	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0030	3807	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0031	3816	1	0	1	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0032	3830	1	0	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0033	3852	1	0	0	0	1	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0034	3850	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0035	3848	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0036	3844	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0037	3838	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0038	3836	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0039	3830	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0040	3829	1	0	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0041	3827	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0042	3816	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0043	3815	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0044	3811	1	0	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0045	3810	1	0	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0046	3810	1	0	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0047	3810	1	0	0	0	0	1	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0048	3810	1	0	0	0	0	1	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0049	3809	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0050	3804	1	0	0	0	0	1	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0051	3802	1	0	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0052	3834	1	0	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0053	3810	1	0	1	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0054	3809	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0055	3807	1	0	1	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0056	3815	1	0	1	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0057	3810	1	0	0	0	0	1	copy fasta	CDK12	chr17	39456486	39539544