JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK12_chr17_39456486_39539544	0/0	t0058	3815	1	0	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	t0059	3815	1	0	0	0	0	1	copy fasta	CDK12	chr17	39456486	39539544
CDK13_chr7_39945256_40104580	0/0	t0001	4988	111	25	33	29	8	16	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0002	4988	65	2	10	43	0	10	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	1/1	t0003	4987	51	0	12	33	2	2	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0004	4989	13	13	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0005	4989	12	11	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0006	4988	10	5	1	0	3	1	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0007	4988	10	9	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0008	4987	9	0	5	0	0	4	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0009	4989	8	7	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0010	4987	3	3	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0011	4988	2	0	2	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0012	4988	2	2	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0013	4987	2	0	0	2	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0014	4989	2	2	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0015	4988	2	0	0	2	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0016	4988	1	0	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0017	4988	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0018	4989	1	0	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0019	4989	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0020	4988	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0021	4988	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0022	4989	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0023	4988	1	0	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0024	4989	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0025	4988	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0026	4987	1	0	0	0	0	1	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0027	4987	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0028	4987	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0029	4988	1	0	0	0	1	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0030	4987	1	0	0	0	0	1	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0031	4987	1	0	0	1	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0032	4988	1	0	0	0	0	1	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0033	4988	1	0	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0034	4987	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	t0035	4988	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK14_chr7_90591321_91215590	0/0	t0001	3765	49	23	12	5	2	7	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0002	3765	14	0	5	4	1	4	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/1	t0003	3766	13	0	1	7	0	4	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0004	3765	11	1	0	9	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0005	3765	11	4	1	0	1	5	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0006	3765	11	11	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0007	3762	6	1	1	3	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0008	3765	4	4	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0009	3766	4	0	4	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0010	3765	3	2	1	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0011	3765	3	0	1	1	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0012	3765	3	1	2	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0013	3764	2	0	2	0	0	0	copy fasta	CDK14	chr7	90591321	91215590