JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK14_chr7_90591321_91215590	0/0	t0014	3765	2	0	0	1	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0015	3763	2	0	2	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0016	3766	2	0	1	1	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0017	3765	2	0	1	0	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0018	3765	1	0	0	0	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0019	3765	1	0	1	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0020	3765	1	0	0	1	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0021	3765	1	1	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0022	3765	1	0	0	0	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0023	3766	1	0	1	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0024	3764	1	0	1	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0025	3765	1	1	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0026	3762	1	1	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0027	3765	1	0	0	1	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0028	3765	1	1	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0029	3764	1	0	0	0	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0030	3765	1	1	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0031	3766	1	0	1	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0032	3766	1	0	0	0	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0033	3762	1	0	0	1	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0034	3765	1	0	0	0	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0035	3766	1	0	0	0	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0036	3762	1	1	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0037	3765	1	1	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0038	3765	1	0	0	0	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0039	3765	1	0	1	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0040	3763	1	0	1	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	1/0	t0041	3762	1	0	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0042	3765	1	1	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	t0043	3765	1	1	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK15_chr2_201801537_201900550	0/1	t0001	2408	40	0	6	22	0	11	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0002	2408	30	5	9	10	1	5	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0003	2408	26	4	4	14	1	3	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0004	2410	20	5	4	9	1	1	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0005	2410	19	2	5	10	1	1	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0006	2422	16	8	0	7	0	1	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0007	2410	15	11	0	4	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0008	2412	10	2	5	0	2	1	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0009	2408	7	3	0	3	0	1	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0010	2424	7	0	1	4	0	2	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0011	2420	7	3	3	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0012	2410	7	0	2	2	0	3	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0013	2408	7	0	0	5	1	1	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0014	2412	6	2	2	2	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0015	2406	5	0	0	5	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0016	2422	4	2	0	2	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	1/0	t0017	2412	4	2	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0018	2404	4	4	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0019	2414	4	1	1	1	1	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0020	2412	4	0	1	0	2	1	copy fasta	CDK15	chr2	201801537	201900550