JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK15_chr2_201801537_201900550	0/0	t0021	2434	3	2	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0022	2424	3	3	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0023	2412	3	1	0	0	1	1	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0024	2412	3	1	1	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0025	2406	3	1	2	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0026	2412	3	0	1	0	0	2	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0027	2412	3	0	0	3	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0028	2410	3	0	0	3	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0029	2406	3	3	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0030	2410	3	2	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0031	2412	2	2	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0032	2410	2	0	2	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0033	2432	2	2	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0034	2410	2	0	0	2	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0035	2409	2	0	1	0	0	1	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0036	2409	2	0	1	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0037	2408	2	2	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0038	2406	2	0	0	0	0	2	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0039	2408	2	0	0	0	0	2	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0040	2418	2	1	0	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0041	2412	2	1	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0042	2418	1	0	0	0	1	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0043	2408	1	0	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0044	2428	1	0	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0045	2424	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0046	2423	1	0	0	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0047	2420	1	0	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0048	2414	1	0	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0049	2412	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0050	2410	1	0	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0051	2424	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0052	2430	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0053	2425	1	0	0	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0054	2424	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0055	2423	1	0	0	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0056	2423	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0057	2422	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0058	2418	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0059	2414	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0060	2414	1	0	0	0	0	1	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0061	2412	1	0	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0062	2412	1	0	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0063	2409	1	0	0	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0064	2408	1	0	0	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0065	2408	1	0	0	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0066	2406	1	0	0	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0067	2404	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0068	2423	1	0	0	1	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	t0069	2408	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK16_chrX_47213681_47234997	1/1	t0001	1661	251	47	47	120	9	26	copy fasta	CDK16	chrX	47213681	47234997