JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK16_chrX_47213681_47234997	0/0	t0002	1661	9	7	2	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0003	1661	8	0	0	8	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0004	1661	6	4	2	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0005	1660	6	0	0	5	0	1	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0006	1661	5	4	1	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0007	1660	4	2	1	1	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0008	1661	3	2	1	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0009	1661	3	3	0	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0010	1662	3	0	2	1	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0011	1661	2	2	0	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0012	1661	2	2	0	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0013	1661	2	2	0	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0014	1661	1	1	0	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0015	1660	1	1	0	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0016	1661	1	0	0	0	0	1	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0017	1661	1	1	0	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0018	1661	1	0	0	1	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0019	1661	1	1	0	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0020	1661	1	1	0	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	t0021	1663	1	0	0	1	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK17_chr12_96273261_96405439	1/0	t0001	2465	186	44	44	74	5	18	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0002	2465	40	1	3	20	5	11	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/1	t0003	2465	28	7	10	0	3	7	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0004	2465	24	5	5	13	1	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0005	2465	19	18	1	0	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0006	2465	11	0	1	10	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0007	2465	9	4	3	0	2	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0008	2465	8	8	0	0	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0009	2465	6	0	5	0	0	1	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0010	2461	3	0	0	2	1	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0011	2465	2	0	1	0	1	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0012	2465	2	0	0	0	0	2	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0013	2465	1	0	0	1	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0014	2465	1	0	0	1	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0015	2465	1	0	0	1	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0016	2465	1	0	0	0	0	1	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0017	2465	1	1	0	0	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0018	2465	1	0	0	1	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0019	2465	1	0	0	1	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	t0020	2465	1	0	1	0	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK18_chr1_205499669_205537790	0/0	t0001	1562	110	6	10	74	6	14	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0002	1562	97	17	19	46	3	12	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	1/0	t0003	1562	59	24	10	20	0	4	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0004	1562	31	8	10	1	5	7	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/1	t0005	1562	26	7	9	2	2	5	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0006	1563	16	0	7	7	0	2	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0007	1562	9	6	3	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0008	1562	5	4	1	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0009	1562	5	3	2	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0010	1563	4	4	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790