JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK18_chr1_205499669_205537790	0/0	t0011	1562	4	4	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0012	1562	3	0	3	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0013	1563	2	2	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0014	1562	2	0	0	2	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0015	1562	2	2	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0016	1562	1	1	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0017	1563	1	1	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0018	1562	1	1	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0019	1563	1	1	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0020	1563	1	1	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0021	1563	1	0	1	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0022	1562	1	0	0	1	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0023	1562	1	1	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0024	1562	1	0	0	1	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0025	1562	1	1	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0026	1562	1	0	1	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0027	1562	1	0	0	1	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	t0028	1562	1	0	0	1	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK19_chr6_110604978_110820469	0/0	t0001	4889	50	8	3	30	1	8	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/1	t0002	4891	44	16	9	10	0	8	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0003	4891	33	0	1	31	0	1	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0004	4891	27	19	6	1	1	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0005	4891	24	2	5	13	0	4	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0006	4889	17	0	6	9	1	1	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0007	4891	14	0	0	12	0	2	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0008	4889	14	0	0	14	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0009	4895	9	0	3	3	0	3	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0010	4890	8	0	1	7	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0011	4889	7	6	1	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0012	4889	6	6	0	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0013	4890	6	5	1	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	1/0	t0014	4891	5	0	2	0	1	1	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0015	4891	3	0	0	3	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0016	4890	3	3	0	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0017	4892	2	2	0	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0018	4892	2	1	1	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0019	4891	2	0	0	0	0	2	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0020	4890	2	0	2	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0021	4893	2	0	0	2	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0022	4890	1	0	0	1	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0023	4891	1	0	1	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0024	4889	1	0	1	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0025	4891	1	1	0	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0026	4890	1	1	0	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0027	4891	1	0	0	1	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0028	4890	1	1	0	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0029	4891	1	0	1	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0030	4890	1	0	0	0	0	1	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0031	4889	1	0	0	1	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0032	4889	1	0	1	0	0	0	copy fasta	CDK19	chr6	110604978	110820469