JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK19_chr6_110604978_110820469	0/0	t0033	4889	1	1	0	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0034	4889	1	0	1	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0035	4891	1	0	0	0	0	1	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0036	4892	1	1	0	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0037	4891	1	0	0	1	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0038	4890	1	1	0	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0039	4893	1	1	0	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0040	4893	1	0	0	1	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK19_chr6_110604978_110820469	0/0	t0041	4891	1	1	0	0	0	0	copy fasta	CDK19	chr6	110604978	110820469
CDK1_chr10_60773478_60799852	0/0	t0001	996	176	24	26	104	5	17	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	1/1	t0002	996	101	25	19	46	1	8	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	t0003	993	99	14	15	47	11	12	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	t0004	996	46	5	18	18	1	4	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	t0005	996	29	22	3	0	0	4	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	t0006	996	2	0	0	0	0	2	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	t0007	996	2	2	0	0	0	0	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	t0008	993	1	0	0	0	0	1	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	t0009	996	1	0	1	0	0	0	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	t0010	1028	1	0	0	1	0	0	copy fasta	CDK1	chr10	60773478	60799852
CDK20_chr9_87961441_87979533	0/1	t0001	1109	217	72	45	60	12	27	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	1/0	t0002	1109	153	20	15	106	2	9	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	t0003	1109	62	1	9	49	0	3	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	t0004	1109	3	0	1	0	0	2	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	t0005	1109	2	2	0	0	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	t0006	1109	1	0	0	1	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	t0007	1109	1	1	0	0	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	t0008	1109	1	0	0	0	0	1	copy fasta	CDK20	chr9	87961441	87979533
CDK2AP1_chr12_123255976_123276856	1/0	t0001	999	274	79	42	112	12	28	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/1	t0002	999	32	7	15	0	3	6	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	t0003	999	9	0	0	4	0	5	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	t0004	999	5	0	2	0	3	0	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	t0005	999	3	1	1	0	0	1	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	t0006	999	1	1	0	0	0	0	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	t0007	999	1	1	0	0	0	0	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	t0008	999	1	0	1	0	0	0	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	t0009	999	1	0	1	0	0	0	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	t0010	999	1	1	0	0	0	0	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP2_chr11_67501497_67513162	1/1	t0001	529	284	69	58	106	17	32	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2AP2_chr11_67501497_67513162	0/0	t0002	530	20	19	1	0	0	0	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2AP2_chr11_67501497_67513162	0/0	t0003	529	4	0	0	3	0	1	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2AP2_chr11_67501497_67513162	0/0	t0004	529	2	2	0	0	0	0	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2AP2_chr11_67501497_67513162	0/0	t0005	529	1	1	0	0	0	0	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2AP2_chr11_67501497_67513162	0/0	t0006	529	1	0	0	0	0	1	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2AP2_chr11_67501497_67513162	0/0	t0007	529	1	0	0	0	1	0	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2AP2_chr11_67501497_67513162	0/0	t0008	529	1	0	1	0	0	0	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2AP2_chr11_67501497_67513162	0/0	t0009	529	1	1	0	0	0	0	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2AP2_chr11_67501497_67513162	0/0	t0010	529	1	0	0	1	0	0	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2_chr12_55961830_55977789	1/1	t0001	1344	249	51	48	110	12	26	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0002	1343	42	3	12	21	1	5	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0003	1343	24	1	0	21	0	2	copy fasta	CDK2	chr12	55961830	55977789