JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK2_chr12_55961830_55977789	0/0	t0004	1344	19	19	0	0	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0005	1345	16	5	6	0	2	3	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0006	1345	16	6	7	1	0	2	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0007	1344	14	2	8	0	1	3	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0008	1344	4	0	3	0	1	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0009	1345	4	4	0	0	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0010	1344	3	3	0	0	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0011	1343	2	0	0	2	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0012	1344	2	0	0	2	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0013	1342	1	0	0	1	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0014	1344	1	0	0	0	0	1	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0015	1344	1	0	0	1	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0016	1344	1	0	0	1	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0017	1346	1	1	0	0	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0018	1343	1	0	0	0	1	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0019	1344	1	0	0	1	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0020	1344	1	0	0	1	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0021	1343	1	0	1	0	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0022	1344	1	0	0	1	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0023	1344	1	0	1	0	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0024	1344	1	1	0	0	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0025	1344	1	1	0	0	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0026	1344	1	1	0	0	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	t0027	1343	1	0	0	1	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK3_chr17_75995855_76010998	0/1	t0001	703	301	68	58	129	11	34	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	1/0	t0002	703	56	4	16	23	5	7	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	t0003	703	25	23	2	0	0	0	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	t0004	691	5	0	4	0	0	1	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	t0005	703	1	0	0	1	0	0	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	t0006	703	1	1	0	0	0	0	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	t0007	703	1	0	0	1	0	0	copy fasta	CDK3	chr17	75995855	76010998
CDK4_chr12_57742727_57757310	1/1	t0001	954	243	37	50	110	13	31	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	t0002	954	76	27	19	20	5	5	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	t0003	953	15	14	1	0	0	0	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	t0004	953	12	5	0	2	0	5	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	t0005	955	6	6	0	0	0	0	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	t0006	954	4	0	4	0	0	0	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	t0007	953	2	0	0	2	0	0	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	t0008	954	2	0	0	2	0	0	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	t0009	954	1	0	0	1	0	0	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	t0010	954	1	0	0	1	0	0	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	t0011	954	1	1	0	0	0	0	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	t0012	954	1	0	0	0	0	1	copy fasta	CDK4	chr12	57742727	57757310
CDK5R1_chr17_32481993_32496253	1/0	t0001	3025	309	77	40	150	7	34	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0002	3025	46	3	30	1	3	9	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0003	3019	9	7	2	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0004	3025	7	0	0	7	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0005	3025	5	0	2	0	0	3	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0006	3025	4	0	0	4	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/1	t0007	3025	3	0	2	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253