JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK5R1_chr17_32481993_32496253	0/0	t0008	3034	2	2	0	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0009	3025	2	0	1	0	0	1	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0010	3025	2	2	0	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0011	3025	2	0	0	2	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0012	3025	2	0	2	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0013	3025	2	0	2	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0014	3025	1	1	0	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0015	3034	1	0	0	0	0	1	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0016	3025	1	0	1	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0017	3035	1	0	0	0	0	1	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0018	3025	1	1	0	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0019	3025	1	1	0	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0020	3025	1	0	0	1	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0021	3025	1	0	0	1	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0022	3025	1	1	0	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0023	3025	1	0	0	0	0	1	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	t0024	3025	1	1	0	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R2_chr2_218954666_218967155	1/1	t0001	1387	368	94	56	177	4	35	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	t0002	1387	10	0	4	3	0	3	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	t0003	1387	5	0	0	0	2	3	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	t0004	1387	1	0	0	0	0	1	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	t0005	1387	1	0	0	1	0	0	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	t0006	1387	1	0	0	1	0	0	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	t0007	1387	1	1	0	0	0	0	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	t0008	1387	1	1	0	0	0	0	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5RAP1_chr20_33353839_33406519	1/1	t0001	317	340	70	60	156	12	40	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	t0002	317	17	17	0	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	t0003	317	1	1	0	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP2_chr9_120383875_120585167	0/1	t0001	551	219	63	39	98	4	14	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	t0002	551	5	5	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	1/0	t0003	551	4	3	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	t0004	551	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	t0005	551	1	0	1	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	t0006	551	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	t0007	551	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP3_chr17_47966113_47986781	1/0	t0001	314	272	83	64	78	12	34	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/1	t0002	314	116	6	11	85	4	9	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	t0003	314	4	0	3	0	0	1	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	t0004	314	1	1	0	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	t0005	314	1	0	0	1	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5_chr7_151048815_151062897	1/0	t0001	244	393	94	67	178	15	38	copy fasta	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/1	t0002	244	15	2	3	1	3	5	copy fasta	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	t0003	244	4	0	0	4	0	0	copy fasta	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	t0004	244	2	0	0	2	0	0	copy fasta	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	t0005	244	1	0	0	0	0	1	copy fasta	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	t0006	244	1	0	0	1	0	0	copy fasta	CDK5	chr7	151048815	151062897
CDK6_chr7_92599921_92841573	0/0	t0001	10682	22	8	3	10	0	1	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0002	10682	19	6	0	8	0	5	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/1	t0003	10684	8	1	1	3	0	2	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0004	10682	7	7	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573