JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK6_chr7_92599921_92841573	0/0	t0005	10681	6	0	3	2	0	1	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0006	10671	6	6	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0007	10684	6	0	3	1	0	2	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0008	10670	2	1	1	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0009	10682	2	0	0	2	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0010	10681	2	2	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0011	10674	2	2	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0012	10681	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0013	10682	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0014	10682	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0015	10679	1	0	0	0	0	1	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0016	10681	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0017	10686	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0018	10681	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0019	10681	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0020	10679	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0021	10678	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0022	10677	1	0	0	0	0	1	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0023	10671	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0024	10671	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0025	10678	1	0	0	1	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0026	10677	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0027	10677	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0028	10680	1	0	0	1	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0029	10675	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0030	10682	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0031	10682	1	0	1	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0032	10682	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0033	10682	1	0	0	1	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0034	10682	1	0	0	0	0	1	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0035	10682	1	0	0	1	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0036	10682	1	0	0	1	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0037	10682	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0038	10682	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0039	10682	1	0	0	1	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0040	10681	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0041	10682	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0042	10681	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0043	10681	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0044	10684	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	1/0	t0045	10683	1	0	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0046	10684	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0047	10686	1	0	1	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0048	10686	1	0	1	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0049	10688	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0050	10674	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0051	10678	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0052	10676	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	t0053	10685	1	1	0	0	0	0	copy fasta	CDK6	chr7	92599921	92841573
CDK7_chr5_69229886_69282430	0/1	t0001	386	373	89	71	166	6	40	copy fasta	CDK7	chr5	69229886	69282430