JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDK7_chr5_69229886_69282430	0/0	t0002	386	1	0	1	0	0	0	copy fasta	CDK7	chr5	69229886	69282430
CDK7_chr5_69229886_69282430	0/0	t0003	386	1	1	0	0	0	0	copy fasta	CDK7	chr5	69229886	69282430
CDK8_chr13_26249129_26410238	1/1	t0001	1671	301	73	56	127	13	30	copy fasta	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	t0002	1671	10	8	1	0	1	0	copy fasta	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	t0003	1671	10	10	0	0	0	0	copy fasta	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	t0004	1670	3	0	1	0	0	2	copy fasta	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	t0005	1671	1	0	0	1	0	0	copy fasta	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	t0006	1671	1	1	0	0	0	0	copy fasta	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	t0007	1671	1	0	0	0	0	1	copy fasta	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	t0008	1671	1	0	0	0	0	1	copy fasta	CDK8	chr13	26249129	26410238
CDK9_chr9_127781034_127795792	1/1	t0001	1365	173	46	26	62	8	29	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0002	1365	103	5	34	52	3	9	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0003	1365	33	1	0	32	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0004	1365	28	23	5	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0005	1366	17	1	0	16	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0006	1365	14	0	4	10	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0007	1365	7	7	0	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0008	1364	7	1	2	2	1	1	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0009	1364	6	4	2	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0010	1365	5	1	3	0	0	1	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0011	1365	2	2	0	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0012	1364	2	0	0	2	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0013	1365	2	0	0	0	0	2	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0014	1365	1	0	0	1	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0015	1365	1	1	0	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0016	1365	1	0	0	0	0	1	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0017	1364	1	0	0	1	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0018	1365	1	0	0	1	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0019	1365	1	0	1	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0020	1366	1	0	0	1	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0021	1366	1	1	0	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0022	1365	1	0	1	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0023	1365	1	0	0	1	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0024	1365	1	0	0	0	0	1	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0025	1365	1	1	0	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	t0026	1365	1	0	0	1	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDKAL1_chr6_20529457_21237404	0/0	t0001	1532	23	16	0	4	0	3	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0002	1535	23	1	4	13	1	4	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0003	1532	22	3	6	5	4	4	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0004	1532	15	13	2	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0005	1533	12	1	2	8	0	1	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0006	1532	9	3	1	0	4	1	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0007	1534	8	4	2	2	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0008	1532	7	2	0	3	0	2	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0009	1532	5	0	4	0	0	1	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0010	1535	5	1	2	1	1	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0011	1533	4	4	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0012	1531	4	0	2	2	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0013	1532	4	0	1	3	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0014	1534	3	0	1	2	0	0	copy fasta	CDKAL1	chr6	20529457	21237404