JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDKAL1_chr6_20529457_21237404	0/0	t0015	1531	3	2	0	1	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0016	1536	3	1	1	1	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0017	1532	2	0	2	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0018	1533	2	1	1	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0019	1535	2	0	0	2	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0020	1532	2	0	0	0	1	1	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0021	1532	2	2	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	1/0	t0022	1533	2	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0023	1535	2	1	0	1	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0024	1532	2	0	2	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0025	1534	2	0	1	1	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0026	1532	2	2	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0027	1533	2	0	0	2	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/1	t0028	1533	2	0	1	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0029	1532	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0030	1532	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0031	1532	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0032	1530	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0033	1532	1	0	1	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0034	1532	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0035	1532	1	0	0	1	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0036	1530	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0037	1531	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0038	1532	1	0	0	0	0	1	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0039	1533	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0040	1535	1	0	0	0	1	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0041	1531	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0042	1532	1	0	0	0	1	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0043	1532	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0044	1533	1	0	0	1	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0045	1532	1	0	0	1	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0046	1536	1	0	0	1	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0047	1533	1	0	0	1	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0048	1533	1	0	1	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0049	1533	1	0	1	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	t0050	1532	1	0	0	0	1	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKL1_chr14_50321265_50401881	0/1	t0001	4319	38	5	7	21	1	3	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0002	4321	19	2	6	9	1	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	1/0	t0003	4329	14	0	1	2	2	8	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0004	4326	13	0	3	7	1	2	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0005	4284	10	0	0	8	0	2	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0006	4325	6	1	0	3	1	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0007	4324	5	4	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0008	4321	5	1	3	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0009	4284	5	0	0	5	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0010	4324	5	0	0	5	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0011	4322	5	4	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0012	4320	4	2	0	2	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0013	4327	4	3	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0014	4327	3	2	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881