JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDKL1_chr14_50321265_50401881	0/0	t0015	4330	3	0	2	0	1	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0016	4328	3	0	0	2	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0017	4321	3	0	0	0	0	3	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0018	4318	3	0	1	1	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0019	4321	3	0	3	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0020	4320	3	3	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0021	4325	3	0	0	1	1	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0022	4324	3	0	2	0	1	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0023	4323	3	0	3	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0024	4326	2	0	2	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0025	4332	2	0	0	0	2	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0026	4326	2	0	0	2	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0027	4283	2	0	1	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0028	4326	2	2	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0029	4321	2	0	0	2	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0030	4321	2	0	2	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0031	4321	2	1	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0032	4320	2	0	0	2	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0033	4323	2	1	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0034	4323	2	0	0	2	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0035	4324	2	2	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0036	4322	2	0	0	2	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0037	4319	2	0	0	2	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0038	4329	2	2	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0039	4314	2	0	2	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0040	4327	2	0	1	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0041	4325	2	2	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0042	4324	2	0	1	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0043	4325	2	2	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0044	4323	2	2	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0045	4332	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0046	4320	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0047	4321	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0048	4320	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0049	4318	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0050	4322	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0051	4318	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0052	4321	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0053	4328	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0054	4325	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0055	4329	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0056	4328	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0057	4327	1	0	0	0	1	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0058	4329	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0059	4325	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0060	4325	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0061	4329	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0062	4326	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0063	4326	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0064	4332	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881