JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDKL1_chr14_50321265_50401881	0/0	t0065	4331	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0066	4330	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0067	4328	1	0	0	0	1	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0068	4329	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0069	4326	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0070	4322	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0071	4292	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0072	4328	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0073	4327	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0074	4325	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0075	4332	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0076	4334	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0077	4333	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0078	4330	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0079	4329	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0080	4330	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0081	4329	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0082	4328	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0083	4292	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0084	4327	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0085	4319	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0086	4318	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0087	4317	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0088	4326	1	0	0	0	1	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0089	4323	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0090	4323	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0091	4325	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0092	4324	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0093	4323	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0094	4325	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0095	4322	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0096	4321	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0097	4323	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0098	4321	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0099	4319	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0100	4317	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0101	4285	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0102	4321	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0103	4319	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0104	4321	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0105	4323	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0106	4320	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0107	4286	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0108	4316	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0109	4325	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0110	4323	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0111	4322	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0112	4320	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0113	4321	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0114	4325	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881