JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDKL1_chr14_50321265_50401881	0/0	t0115	4328	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0116	4325	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0117	4325	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0118	4322	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0119	4322	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0120	4321	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0121	4322	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0122	4287	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0123	4286	1	0	0	1	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0124	4325	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0125	4322	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0126	4327	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0127	4326	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0128	4326	1	0	0	0	1	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0129	4323	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0130	4322	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0131	4312	1	0	0	0	1	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0132	4324	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0133	4323	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0134	4320	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0135	4318	1	0	1	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0136	4325	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0137	4330	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0138	4328	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0139	4326	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0140	4324	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0141	4321	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0142	4328	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0143	4288	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0144	4317	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	t0145	4326	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL2_chr4_75571496_75635528	0/0	t0001	3225	80	8	17	35	3	17	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0002	3225	63	15	13	21	2	12	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0003	3223	34	23	7	1	3	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0004	3224	34	7	14	10	2	1	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	1/1	t0005	3223	32	1	9	11	4	5	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0006	3224	14	14	0	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0007	3226	7	0	0	5	0	2	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0008	3223	6	0	1	4	1	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0009	3224	6	5	1	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0010	3226	6	1	1	2	0	2	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0011	3224	4	4	0	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0012	3223	3	3	0	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0013	3223	2	2	0	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0014	3225	2	0	0	2	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0015	3224	2	2	0	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0016	3225	1	0	1	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0017	3225	1	0	0	1	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0018	3223	1	0	0	1	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0019	3223	1	1	0	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528