JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDKL2_chr4_75571496_75635528	0/0	t0020	3223	1	0	0	0	0	1	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0021	3224	1	0	0	0	1	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0022	3225	1	1	0	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0023	3225	1	0	0	1	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0024	3225	1	0	1	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0025	3224	1	1	0	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	t0026	3223	1	0	1	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL3_chr5_134293424_134372171	1/1	t0001	444	196	62	52	50	12	18	copy fasta	CDKL3	chr5	134293424	134372171
CDKL3_chr5_134293424_134372171	0/0	t0002	444	7	7	0	0	0	0	copy fasta	CDKL3	chr5	134293424	134372171
CDKL3_chr5_134293424_134372171	0/0	t0003	444	7	7	0	0	0	0	copy fasta	CDKL3	chr5	134293424	134372171
CDKL4_chr2_39170646_39248970	0/1	t0001	507	174	36	38	64	10	25	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	t0002	506	50	0	10	33	0	7	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	t0003	507	34	32	2	0	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	1/0	t0004	506	21	18	2	0	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	t0005	507	7	0	1	6	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	t0006	507	2	2	0	0	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	t0007	507	1	0	0	1	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	t0008	506	1	0	1	0	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL5_chrX_18420608_18645196	0/0	t0001	11687	32	8	6	13	0	5	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0002	11684	32	6	5	16	1	4	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	1/0	t0003	11690	14	2	2	6	1	2	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0004	11687	12	0	2	10	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0005	11693	11	0	3	4	3	1	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0006	11693	5	4	1	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0007	11696	4	0	0	3	0	1	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0008	11681	4	2	2	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0009	11672	4	4	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0010	11688	3	0	0	3	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0011	11681	3	0	0	3	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0012	11685	3	1	2	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0013	11685	3	0	0	3	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0014	11687	3	3	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0015	11693	2	0	0	1	0	1	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0016	11688	2	0	0	1	0	1	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0017	11687	2	0	0	2	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0018	11669	2	2	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0019	11691	2	0	0	2	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0020	11687	2	0	0	0	2	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0021	11690	2	2	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0022	11687	2	2	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0023	11684	2	2	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0024	11693	2	0	2	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0025	11685	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0026	11680	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0027	11684	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0028	11681	1	0	1	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0029	11696	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0030	11690	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0031	11687	1	0	0	0	0	1	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0032	11688	1	1	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196