JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDKL5_chrX_18420608_18645196	0/0	t0033	11687	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0034	11691	1	1	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0035	11688	1	1	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0036	11690	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0037	11688	1	1	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0038	11669	1	0	0	0	0	1	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0039	11687	1	0	1	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0040	11689	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0041	11697	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0042	11691	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0043	11694	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0044	11691	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0045	11688	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0046	11687	1	0	0	0	0	1	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0047	11690	1	0	0	0	0	1	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0048	11684	1	0	0	0	0	1	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0049	11682	1	0	1	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0050	11690	1	1	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0051	11686	1	1	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0052	11693	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0053	11684	1	0	1	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0054	11696	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0055	11696	1	1	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0056	11687	1	1	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0057	11688	1	1	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0058	11690	1	0	1	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0059	11690	1	1	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/1	t0060	11687	1	0	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0061	11686	1	1	0	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0062	11691	1	0	1	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	t0063	11685	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKN1A_chr6_36673714_36692332	0/1	t0001	1623	276	58	59	113	12	33	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0002	1623	135	15	18	93	2	7	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	1/0	t0003	1623	10	1	3	0	2	3	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0004	1623	5	5	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0005	1623	4	4	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0006	1623	3	2	1	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0007	1623	3	0	0	1	0	2	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0008	1623	2	0	0	2	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0009	1623	2	2	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0010	1623	2	2	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0011	1623	1	0	0	1	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0012	1623	1	0	0	1	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0013	1623	1	1	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0014	1623	1	1	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0015	1623	1	0	0	0	0	1	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0016	1623	1	1	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0017	1623	1	1	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0018	1623	1	0	0	1	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0019	1623	1	0	0	1	0	0	copy fasta	CDKN1A	chr6	36673714	36692332