JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDKN1A_chr6_36673714_36692332	0/0	t0020	1623	1	0	0	1	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0021	1623	1	1	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	t0022	1623	1	0	1	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1B_chr12_12712368_12727369	0/1	t0001	1815	185	36	35	84	8	21	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0002	1815	81	1	3	68	0	9	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0003	1815	68	15	21	20	5	7	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	1/0	t0004	1815	59	27	12	14	2	3	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0005	1815	17	1	0	16	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0006	1815	15	7	1	6	0	1	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0007	1815	2	2	0	0	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0008	1815	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0009	1815	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0010	1815	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0011	1815	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0012	1815	1	1	0	0	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0013	1815	1	1	0	0	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0014	1815	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0015	1815	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0016	1815	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0017	1815	1	0	0	0	1	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0018	1815	1	1	0	0	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0019	1815	1	0	0	0	0	1	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0020	1815	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0021	1815	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	t0022	1815	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1C_chr11_2878218_2890775	0/1	t0001	856	408	99	76	172	18	42	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	t0002	857	6	1	2	3	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	t0003	856	1	0	0	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	t0004	856	1	0	1	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	t0005	826	1	0	1	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN2AIPNL_chr5_134397065_134416881	1/1	t0001	878	361	71	58	168	18	44	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	t0002	871	5	4	1	0	0	0	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	t0003	878	4	4	0	0	0	0	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	t0004	878	4	4	0	0	0	0	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	t0005	873	3	2	1	0	0	0	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	t0006	878	1	0	1	0	0	0	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	t0007	878	1	1	0	0	0	0	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	t0008	878	1	0	1	0	0	0	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIP_chr4_183439636_183454064	1/1	t0001	1800	312	79	62	121	8	40	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0002	1800	65	1	4	58	0	2	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0003	1800	60	1	9	39	4	7	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0004	1800	16	6	4	4	1	1	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0005	1801	3	0	2	0	1	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0006	1787	2	2	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0007	1800	2	1	1	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0008	1800	2	0	0	2	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0009	1800	2	2	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0010	1786	1	1	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0011	1787	1	1	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0012	1787	1	1	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064