JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDKN2AIP_chr4_183439636_183454064	0/0	t0013	1800	1	1	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0014	1800	1	0	1	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	t0015	1800	1	0	1	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2A_chr9_21962752_21979857	0/0	t0001	508	300	56	45	155	10	34	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	t0002	508	62	13	20	19	1	9	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	1/1	t0003	508	36	14	8	4	3	5	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	t0004	508	6	5	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	t0005	508	3	3	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	t0006	508	2	0	2	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	t0007	508	2	0	0	2	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	t0008	508	1	1	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	t0009	508	1	0	0	1	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	t0010	508	1	0	0	1	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	t0011	508	1	1	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	t0012	508	1	1	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21999392	0/0	t0001	654	282	52	45	138	11	36	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	t0002	654	66	14	24	18	1	9	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	1/1	t0003	654	38	16	7	4	4	5	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	t0004	654	6	5	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	t0005	654	3	3	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	t0006	654	2	0	0	2	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	t0007	654	2	2	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	t0008	654	1	1	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	t0009	654	1	0	0	1	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	t0010	654	1	0	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	t0011	654	1	1	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	t0012	654	1	0	0	1	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2B_chr9_21997903_22014305	0/0	t0001	3440	115	9	26	58	5	17	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0002	3439	58	2	15	28	6	7	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0003	3437	41	1	20	14	0	6	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0004	3443	21	20	1	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0005	3439	21	21	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0006	3446	20	0	0	20	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0007	3435	19	6	4	1	3	5	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0008	3437	16	12	1	0	0	3	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0009	3444	12	0	0	12	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/1	t0010	3442	11	3	2	5	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0011	3440	11	0	0	11	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0012	3448	8	0	0	8	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0013	3439	5	4	1	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0014	3441	4	3	0	0	0	1	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0015	3441	4	4	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0016	3424	4	0	0	4	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0017	3441	3	3	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	1/0	t0018	3437	3	0	0	0	1	1	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0019	3440	2	0	0	2	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0020	3442	2	0	0	1	0	1	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0021	3441	2	0	1	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0022	3439	2	0	0	2	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0023	3437	2	0	1	0	1	0	copy fasta	CDKN2B	chr9	21997903	22014305