JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDKN2B_chr9_21997903_22014305	0/0	t0024	3435	2	0	2	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0025	3440	2	0	0	0	0	2	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0026	3435	1	1	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0027	3439	1	1	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0028	3437	1	1	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0029	3439	1	0	0	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0030	3447	1	0	0	0	0	1	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0031	3445	1	1	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0032	3443	1	1	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0033	3444	1	1	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0034	3443	1	1	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0035	3442	1	0	0	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0036	3439	1	0	1	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0037	3439	1	0	0	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0038	3440	1	0	1	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0039	3440	1	0	0	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0040	3440	1	0	0	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0041	3439	1	0	0	0	1	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0042	3437	1	1	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0043	3438	1	0	0	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0044	3437	1	1	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0045	3436	1	0	0	0	0	1	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0046	3445	1	1	0	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0047	3439	1	0	0	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0048	3438	1	0	0	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0049	3437	1	0	0	0	1	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0050	3437	1	0	0	0	0	1	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	t0051	3442	1	0	0	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2C_chr1_50965245_50979634	0/0	t0001	489	265	53	64	105	12	31	copy fasta	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	t0002	489	67	41	5	18	2	1	copy fasta	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	t0003	489	3	0	1	0	0	2	copy fasta	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	t0004	489	1	0	0	1	0	0	copy fasta	CDKN2C	chr1	50965245	50979634
CDKN2D_chr19_10561460_10573979	1/1	t0001	925	406	84	72	186	16	46	copy fasta	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	t0002	925	1	0	0	1	0	0	copy fasta	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	t0003	925	1	1	0	0	0	0	copy fasta	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	t0004	925	1	1	0	0	0	0	copy fasta	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	t0005	911	1	0	0	1	0	0	copy fasta	CDKN2D	chr19	10561460	10573979
CDKN3_chr14_54392007_54425218	1/1	t0001	203	419	98	70	191	16	42	copy fasta	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	t0002	203	1	0	0	1	0	0	copy fasta	CDKN3	chr14	54392007	54425218
CDNF_chr10_14814245_14843037	1/1	t0001	827	271	67	67	95	12	28	copy fasta	CDNF	chr10	14814245	14843037
CDNF_chr10_14814245_14843037	0/0	t0002	827	130	25	7	80	2	16	copy fasta	CDNF	chr10	14814245	14843037
CDNF_chr10_14814245_14843037	0/0	t0003	827	6	0	0	6	0	0	copy fasta	CDNF	chr10	14814245	14843037
CDNF_chr10_14814245_14843037	0/0	t0004	827	4	4	0	0	0	0	copy fasta	CDNF	chr10	14814245	14843037
CDNF_chr10_14814245_14843037	0/0	t0005	827	3	0	0	3	0	0	copy fasta	CDNF	chr10	14814245	14843037
CDNF_chr10_14814245_14843037	0/0	t0006	827	3	0	0	3	0	0	copy fasta	CDNF	chr10	14814245	14843037
CDNF_chr10_14814245_14843037	0/0	t0007	827	1	0	0	1	0	0	copy fasta	CDNF	chr10	14814245	14843037
CDO1_chr5_115799733_115821659	1/1	t0001	963	317	43	73	144	14	41	copy fasta	CDO1	chr5	115799733	115821659
CDO1_chr5_115799733_115821659	0/0	t0002	963	34	33	0	0	0	1	copy fasta	CDO1	chr5	115799733	115821659
CDO1_chr5_115799733_115821659	0/0	t0003	963	18	15	3	0	0	0	copy fasta	CDO1	chr5	115799733	115821659
CDO1_chr5_115799733_115821659	0/0	t0004	963	2	2	0	0	0	0	copy fasta	CDO1	chr5	115799733	115821659