JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDO1_chr5_115799733_115821659	0/0	t0005	963	1	1	0	0	0	0	copy fasta	CDO1	chr5	115799733	115821659
CDON_chr11_125951821_126067866	0/0	t0001	4473	47	4	3	32	2	6	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	1/0	t0002	4471	34	5	11	5	3	9	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0003	4481	33	0	5	25	1	2	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0004	4483	20	1	6	12	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0005	4465	12	1	0	8	0	3	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0006	4471	10	2	4	0	0	4	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0007	4477	8	7	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0008	4481	7	1	1	0	1	4	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0009	4481	7	0	4	1	0	2	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0010	4473	6	0	0	6	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0011	4473	6	1	1	3	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0012	4477	5	5	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0013	4477	4	0	4	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0014	4485	4	0	2	1	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0015	4481	4	0	2	1	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0016	4471	4	3	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0017	4485	3	3	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0018	4471	3	0	0	3	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0019	4475	3	0	0	1	0	2	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0020	4483	3	0	3	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0021	4471	3	0	1	1	1	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0022	4481	3	0	1	2	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0023	4473	3	3	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0024	4489	2	1	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0025	4471	2	0	0	0	0	2	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0026	4473	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0027	4473	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0028	4481	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0029	4487	2	0	0	2	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0030	4479	2	0	0	2	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0031	4483	2	0	0	2	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0032	4479	2	0	0	2	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0033	4479	2	1	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0034	4473	2	1	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0035	4489	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0036	4479	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0037	4473	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0038	4471	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0039	4491	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0040	4493	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0041	4487	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0042	4471	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0043	4473	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0044	4473	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0045	4477	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0046	4471	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0047	4473	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0048	4473	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0049	4473	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866