JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDON_chr11_125951821_126067866	0/0	t0050	4469	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0051	4471	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0052	4471	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0053	4481	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0054	4485	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0055	4483	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0056	4481	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0057	4483	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0058	4484	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0059	4483	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0060	4481	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/1	t0061	4481	1	0	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0062	4483	1	0	0	0	1	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0063	4479	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0064	4485	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0065	4483	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0066	4479	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0067	4481	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0068	4481	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0069	4481	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0070	4479	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0071	4473	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0072	4469	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0073	4477	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0074	4489	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0075	4487	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0076	4485	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0077	4487	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0078	4477	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0079	4475	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0080	4483	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0081	4469	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0082	4471	1	0	0	0	1	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0083	4483	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0084	4477	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0085	4483	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0086	4485	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0087	4487	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0088	4479	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0089	4481	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0090	4481	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0091	4473	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0092	4487	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0093	4473	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0094	4473	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0095	4473	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0096	4471	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0097	4465	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0098	4481	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0099	4477	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866