JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDON_chr11_125951821_126067866	0/0	t0100	4477	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0101	4481	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0102	4471	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0103	4471	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0104	4473	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0105	4473	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0106	4477	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0107	4483	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0108	4479	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0109	4479	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0110	4471	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0111	4483	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	t0112	4477	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDPF1_chr22_46239013_46255293	1/0	t0001	1118	173	20	46	67	10	29	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/1	t0002	1118	30	25	2	0	1	1	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	t0003	1117	24	13	8	0	1	2	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	t0004	1117	17	15	2	0	0	0	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	t0005	1118	15	9	2	0	0	4	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	t0006	1118	10	9	1	0	0	0	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	t0007	1118	4	4	0	0	0	0	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	t0008	1117	2	2	0	0	0	0	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	t0009	1118	1	0	0	1	0	0	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	t0010	1118	1	0	0	0	0	1	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	t0011	1509	1	0	1	0	0	0	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	t0012	1118	1	0	0	0	0	1	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	t0013	1118	1	1	0	0	0	0	copy fasta	CDPF1	chr22	46239013	46255293
CDR2L_chr17_74982632_75010800	0/0	t0001	2139	182	27	31	99	4	21	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/1	t0002	2138	82	14	24	26	3	14	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0003	2136	17	13	3	0	0	1	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0004	2137	13	8	5	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0005	2137	5	5	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0006	2138	5	5	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0007	2138	4	1	0	3	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0008	2138	3	0	0	0	0	3	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0009	2138	3	3	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0010	2139	3	0	1	0	2	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0011	2139	3	3	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0012	2137	3	3	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0013	2139	3	0	0	3	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0014	2137	2	0	0	0	2	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0015	2139	2	1	0	0	1	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0016	2139	2	2	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0017	2136	2	2	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0018	2136	2	2	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	1/0	t0019	2139	1	0	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0020	2139	1	0	0	1	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0021	2138	1	0	0	0	0	1	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0022	2137	1	0	0	1	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0023	2138	1	0	0	1	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0024	2138	1	0	0	1	0	0	copy fasta	CDR2L	chr17	74982632	75010800