JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDR2L_chr17_74982632_75010800	0/0	t0025	2138	1	1	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0026	2138	1	0	1	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0027	2139	1	0	0	1	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0028	2139	1	0	0	1	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0029	2139	1	0	1	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0030	2159	1	1	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0031	2136	1	1	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0032	2138	1	1	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0033	2137	1	1	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	t0034	2138	1	0	0	1	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2_chr16_22340936_22379619	0/1	t0001	1342	245	71	41	80	14	38	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	t0002	1345	34	0	6	28	0	0	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	1/0	t0003	1340	15	13	1	0	0	0	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	t0004	1345	4	3	1	0	0	0	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	t0005	1342	4	1	3	0	0	0	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	t0006	1342	2	0	0	0	0	2	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	t0007	1345	2	0	0	0	0	2	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	t0008	1342	1	0	0	1	0	0	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	t0009	1342	1	0	0	1	0	0	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	t0010	1342	1	1	0	0	0	0	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	t0011	1342	1	1	0	0	0	0	copy fasta	CDR2	chr16	22340936	22379619
CDRT15L2_chr17_20574724_20585911	1/1	t0001	203	395	86	76	173	14	44	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	t0002	203	1	0	0	1	0	0	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15_chr17_14230673_14241862	1/1	t0001	213	455	94	77	222	16	44	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	t0002	213	3	3	0	0	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	t0003	213	2	1	1	0	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	t0004	213	1	0	0	1	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	t0005	213	1	0	0	1	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT4_chr17_15431015_15472621	1/1	t0001	2050	216	46	52	81	15	20	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0002	2049	160	21	25	94	1	19	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0003	2048	10	8	0	1	0	1	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0004	2050	4	0	0	4	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0005	2049	4	2	2	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0006	2047	4	4	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0007	2049	4	2	2	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0008	2050	3	3	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0009	2049	3	0	0	3	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0010	2049	3	3	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0011	2049	2	2	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0012	2050	2	2	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0013	2050	2	0	0	2	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0014	2049	2	2	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0015	2050	1	0	0	0	0	1	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0016	2050	1	0	0	1	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0017	2050	1	0	0	1	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0018	2050	1	0	0	1	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0019	2050	1	0	1	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0020	2049	1	0	0	1	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0021	2049	1	0	0	1	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0022	2049	1	0	0	1	0	0	copy fasta	CDRT4	chr17	15431015	15472621