JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDRT4_chr17_15431015_15472621	0/0	t0023	2049	1	0	0	1	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0024	2049	1	1	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	t0025	2049	1	0	0	0	0	1	copy fasta	CDRT4	chr17	15431015	15472621
CDS1_chr4_84578127_84656334	0/0	t0001	2924	115	11	27	60	4	13	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	1/1	t0002	2924	114	24	18	62	2	6	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0003	2924	67	8	6	39	3	11	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0004	2924	15	14	1	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0005	2924	12	0	5	2	0	5	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0006	2924	10	3	2	0	1	4	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0007	2923	5	5	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0008	2923	5	0	1	4	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0009	2924	4	4	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0010	2924	4	3	1	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0011	2924	4	1	3	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0012	2923	3	2	0	0	1	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0013	2924	3	0	0	3	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0014	2924	2	2	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0015	2924	2	2	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0016	2924	2	1	1	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0017	2924	2	0	0	2	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0018	2924	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0019	2924	1	0	0	0	0	1	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0020	2924	1	0	0	0	1	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0021	2924	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0022	2924	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0023	2924	1	0	0	0	0	1	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0024	2924	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0025	2924	1	0	0	0	0	1	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0026	2924	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0027	2924	1	0	1	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0028	2924	1	0	0	0	0	1	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0029	2923	1	0	0	0	0	1	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0030	2923	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0031	2924	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	t0032	2924	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS2_chr20_5122008_5202887	0/1	t0001	7738	71	10	10	42	0	8	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0002	7739	51	6	14	20	3	8	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0003	7738	31	4	5	15	3	4	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0004	7740	20	0	2	18	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0005	7737	13	1	4	0	1	7	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0006	7739	9	0	2	3	2	2	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0007	7737	7	6	1	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0008	7737	6	1	3	0	0	2	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0009	7737	6	6	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0010	7740	5	1	3	0	0	1	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0011	7738	4	0	1	3	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0012	7737	4	0	2	2	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0013	7737	4	3	1	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0014	7736	4	0	0	4	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0015	7739	4	4	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887