JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDS2_chr20_5122008_5202887	0/0	t0016	7736	3	3	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0017	7738	3	2	0	0	1	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0018	7735	3	3	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0019	7738	3	3	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0020	7739	3	3	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0021	7737	3	1	0	0	0	2	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0022	7739	3	0	0	3	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0023	7739	3	3	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0024	7739	3	0	1	0	2	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0025	7738	3	0	0	3	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0026	7740	3	1	1	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0027	7740	3	3	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0028	7739	3	0	0	3	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0029	7737	2	2	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0030	7735	2	2	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0031	7739	2	2	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0032	7742	2	1	1	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0033	7739	2	0	1	0	0	1	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0034	7737	2	2	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0035	7738	2	2	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0036	7739	2	0	1	0	0	1	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0037	7760	1	0	0	0	0	1	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0038	7737	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0039	7738	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0040	7737	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0041	7737	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0042	7737	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0043	7737	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0044	7738	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0045	7737	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0046	7737	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0047	7737	1	0	0	0	0	1	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0048	7738	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0049	7742	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0050	7742	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0051	7741	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0052	7736	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0053	7736	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0054	7740	1	0	0	0	0	1	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0055	7738	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0056	7738	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0057	7738	1	0	1	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0058	7738	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0059	7738	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0060	7738	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0061	7739	1	0	0	0	0	1	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0062	7738	1	0	1	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0063	7738	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0064	7738	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0065	7738	1	0	1	0	0	0	copy fasta	CDS2	chr20	5122008	5202887