JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDS2_chr20_5122008_5202887	0/0	t0066	7738	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0067	7738	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0068	7738	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0069	7738	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0070	7739	1	0	1	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	1/0	t0071	7739	1	0	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0072	7738	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0073	7738	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0074	7739	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0075	7737	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0076	7738	1	0	1	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0077	7737	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0078	7739	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0079	7739	1	0	0	0	1	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0080	7739	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0081	7734	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0082	7739	1	0	1	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0083	7739	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0084	7739	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0085	7741	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0086	7738	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0087	7738	1	0	0	0	1	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0088	7738	1	0	1	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0089	7738	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	t0090	7740	1	1	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDSN_chr6_31110087_31125446	0/1	t0001	963	199	56	30	86	8	18	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0002	963	80	8	21	39	3	9	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	1/0	t0003	966	61	4	18	33	2	3	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0004	966	31	1	0	20	0	10	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0005	966	25	0	2	23	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0006	966	21	5	4	6	3	3	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0007	966	11	11	0	0	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0008	963	8	4	1	0	1	2	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0009	966	5	1	3	0	0	1	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0010	966	1	0	0	1	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0011	966	1	1	0	0	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0012	966	1	0	1	0	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0013	963	1	0	0	0	1	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	t0014	966	1	1	0	0	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDT1_chr16_88798789_88814258	1/1	t0001	1024	170	26	44	62	11	25	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0002	1024	128	4	14	103	1	6	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0003	1024	55	11	11	30	0	3	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0004	1024	17	15	2	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0005	1024	14	0	7	0	5	2	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0006	1026	14	13	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0007	1026	7	0	1	1	1	4	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0008	1024	5	0	0	5	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0009	1026	5	5	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0010	1024	5	5	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0011	1026	4	4	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258