JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDT1_chr16_88798789_88814258	0/0	t0012	1024	4	4	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0013	1024	3	0	2	0	0	1	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0014	1026	2	2	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0015	1026	2	0	0	2	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0016	1026	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0017	1024	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0018	1024	1	1	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0019	1024	1	0	0	1	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0020	1026	1	1	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0021	1024	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0022	1024	1	0	0	0	0	1	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0023	1024	1	1	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	t0024	1026	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDV3_chr3_133568686_133595261	0/0	t0001	2574	235	21	47	120	11	36	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/1	t0002	2575	44	25	7	7	4	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	1/0	t0003	2575	36	11	15	5	2	2	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0004	2575	19	14	2	2	0	1	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0005	2575	14	11	3	0	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0006	2574	8	0	4	3	1	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0007	2574	5	0	2	2	0	1	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0008	2574	3	0	0	3	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0009	2574	3	3	0	0	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0010	2574	3	3	0	0	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0011	2574	3	0	0	3	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0012	2574	2	0	0	2	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0013	2575	2	2	0	0	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0014	2575	2	0	0	2	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0015	2574	2	0	0	2	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0016	2574	1	1	0	0	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0017	2574	1	0	0	1	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0018	2574	1	1	0	0	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0019	2574	1	0	1	0	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	t0020	2574	1	0	1	0	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDX1_chr5_150161778_150189558	0/0	t0001	978	181	24	45	83	10	19	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/1	t0002	978	177	63	21	65	5	22	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	t0003	978	46	9	6	26	3	2	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	t0004	978	8	0	1	4	0	3	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	t0005	978	2	2	0	0	0	0	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	1/0	t0006	978	1	0	0	0	0	0	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	t0007	978	1	0	1	0	0	0	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	t0008	978	1	0	1	0	0	0	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	t0009	978	1	0	1	0	0	0	copy fasta	CDX1	chr5	150161778	150189558
CDX2_chr13_27955918_27974315	0/1	t0001	2506	160	22	22	79	11	25	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0002	2506	113	12	27	64	4	6	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	1/0	t0003	2507	66	16	11	30	2	6	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0004	2506	22	22	0	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0005	2506	7	1	4	0	1	1	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0006	2506	7	5	2	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0007	2506	5	0	5	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0008	2506	4	0	0	4	0	0	copy fasta	CDX2	chr13	27955918	27974315