JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDYL2_chr16_80592907_80809598	0/0	t0012	6905	5	3	1	0	1	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0013	6907	5	0	2	1	1	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0014	6908	4	4	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0015	6907	3	0	2	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0016	6903	3	3	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0017	6907	3	0	0	3	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0018	6905	2	2	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0019	6905	2	2	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0020	6905	2	2	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0021	6905	2	0	1	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0022	6903	2	0	0	0	1	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0023	6907	1	0	0	1	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0024	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0025	6908	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0026	6907	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0027	6903	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0028	6909	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0029	6904	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0030	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0031	6907	1	0	0	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0032	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0033	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0034	6905	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0035	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0036	6903	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0037	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0038	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0039	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0040	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0041	6907	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0042	6905	1	0	0	1	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0043	6909	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0044	6909	1	0	0	1	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0045	6909	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0046	6909	1	0	0	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0047	6907	1	0	0	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0048	6907	1	0	0	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0049	6907	1	0	0	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0050	6907	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0051	6907	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0052	6907	1	0	0	1	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0053	6907	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0054	6907	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0055	6907	1	0	0	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0056	6907	1	0	0	1	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0057	6909	1	0	0	1	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0058	6908	1	0	0	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0059	6907	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0060	6907	1	0	0	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0061	6907	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598