JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDYL2_chr16_80592907_80809598	0/0	t0062	6907	1	0	0	1	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0063	6903	1	0	0	1	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0064	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0065	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0066	6905	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0067	6906	1	0	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0068	6908	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0069	6908	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0070	6912	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0071	6906	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0072	6909	1	1	0	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL_chr6_4771404_4960544	0/0	t0001	1869	129	26	18	61	4	20	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	1/0	t0002	1869	82	35	19	10	3	14	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/1	t0003	1869	12	8	2	0	1	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	t0004	1869	7	5	2	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	t0005	1869	6	6	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	t0006	1869	5	5	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	t0007	1869	2	0	0	2	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	t0008	1850	1	0	0	0	0	1	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	t0009	1869	1	0	1	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	t0010	1869	1	0	0	1	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	t0011	1869	1	0	0	0	0	1	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	t0012	1869	1	0	0	1	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	t0013	1869	1	1	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	t0014	1869	1	0	0	1	0	0	copy fasta	CDYL	chr6	4771404	4960544
CEACAM16_chr19_44694151_44715718	1/1	t0001	419	445	96	86	199	18	44	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	t0002	419	4	4	0	0	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	t0003	419	1	0	0	1	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM18_chr19_51473539_51496301	0/0	t0001	753	107	17	12	70	6	2	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/1	t0002	755	90	6	31	32	3	17	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0003	756	74	34	15	24	0	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0004	754	38	12	7	5	5	9	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	1/0	t0005	754	27	3	4	15	0	4	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0006	757	25	3	4	8	2	8	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0007	758	9	8	0	1	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0008	757	8	0	0	8	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0009	757	7	1	2	0	1	3	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0010	756	7	0	2	5	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0011	753	4	0	0	4	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0012	753	4	0	0	4	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0013	754	3	3	0	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0014	755	3	0	1	2	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0015	753	2	0	0	2	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0016	754	2	0	0	0	1	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0017	754	1	0	0	0	0	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0018	755	1	0	1	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0019	755	1	1	0	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0020	756	1	1	0	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0021	753	1	0	0	1	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0022	753	1	0	0	1	0	0	copy fasta	CEACAM18	chr19	51473539	51496301