JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEACAM18_chr19_51473539_51496301	0/0	t0023	754	1	0	0	1	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0024	755	1	1	0	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0025	755	1	0	0	1	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	t0026	756	1	0	1	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM19_chr19_44666482_44689355	0/1	t0001	1316	188	48	31	84	5	19	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0002	1316	118	25	32	37	10	14	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	1/0	t0003	1316	36	2	4	19	0	10	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0004	1316	21	6	0	11	0	4	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0005	1316	8	0	1	4	0	3	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0006	1316	6	5	1	0	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0007	1316	4	3	1	0	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0008	1316	2	0	2	0	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0009	1316	2	2	0	0	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0010	1316	1	1	0	0	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0011	1316	1	1	0	0	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0012	1316	1	0	0	1	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0013	1316	1	0	0	0	1	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	t0014	1316	1	1	0	0	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM1_chr19_42502306_42533481	1/1	t0001	1911	181	40	46	54	11	28	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0002	1911	84	39	26	13	0	6	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0003	1911	9	0	0	9	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0004	1911	4	3	1	0	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0005	1911	2	0	0	2	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0006	1911	1	0	0	1	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0007	1911	1	1	0	0	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0008	1911	1	0	0	1	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0009	1911	1	0	0	0	0	1	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0010	1911	1	0	1	0	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0011	1911	1	0	0	0	0	1	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0012	1911	1	1	0	0	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0013	1911	1	1	0	0	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0014	1911	1	0	0	0	1	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	t0015	1911	1	1	0	0	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM20_chr19_44501159_44534675	1/1	t0001	169	426	96	73	197	16	42	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	t0002	169	11	2	0	9	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	t0003	169	1	0	1	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM21_chr19_41571166_41591844	0/0	t0001	491	211	89	19	85	4	14	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/1	t0002	491	173	3	37	91	12	29	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	t0003	492	4	4	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	t0004	491	2	0	0	2	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	t0005	491	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	t0006	491	1	0	0	0	0	1	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	t0007	491	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM3_chr19_41791587_41816554	1/0	t0001	409	226	63	39	100	5	18	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/1	t0002	409	175	7	37	96	11	23	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/0	t0003	409	11	11	0	0	0	0	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/0	t0004	409	2	0	0	0	0	2	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/0	t0005	409	1	1	0	0	0	0	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/0	t0006	409	1	0	0	0	0	1	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM4_chr19_41614015_41632074	0/1	t0001	427	287	64	57	117	13	35	copy fasta	CEACAM4	chr19	41614015	41632074