JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEACAM4_chr19_41614015_41632074	0/0	t0002	427	91	2	2	79	0	8	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0003	427	19	0	10	1	5	3	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0004	428	12	11	1	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0005	427	9	9	0	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0006	427	6	6	0	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0007	427	2	2	0	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0008	427	2	0	2	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0009	428	2	2	0	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0010	427	1	0	0	1	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0011	427	1	0	0	1	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0012	427	1	1	0	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0013	427	1	0	0	1	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0014	428	1	1	0	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0015	428	1	1	0	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	t0016	428	1	1	0	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM5_chr19_41703626_41735433	0/0	t0001	1393	147	21	15	83	7	21	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/1	t0002	1396	100	15	22	51	5	6	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	1/0	t0003	1393	47	4	22	8	4	8	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0004	1398	29	28	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0005	1396	11	11	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0006	1396	11	0	7	0	1	3	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0007	1396	7	6	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0008	1393	5	1	2	0	0	2	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0009	1393	4	1	1	0	1	1	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0010	1393	3	0	3	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0011	1393	1	0	0	1	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0012	1396	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0013	1393	1	0	0	1	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0014	1395	1	0	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0015	1396	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0016	1393	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0017	1393	1	0	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0018	1393	1	0	0	1	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0019	1393	1	0	0	1	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	t0020	1393	1	0	0	0	0	1	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM6_chr19_41750530_41777211	1/0	t0001	1560	221	60	37	99	3	21	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/1	t0002	1560	157	6	36	86	10	18	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0003	1560	15	0	0	15	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0004	1560	12	11	1	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0005	1560	4	0	3	0	1	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0006	1560	2	0	0	2	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0007	1560	2	0	0	0	0	2	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0008	1560	2	0	0	2	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0009	1560	1	0	1	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0010	1560	1	0	0	1	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0011	1560	1	0	0	0	0	1	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0012	1560	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0013	1560	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0014	1560	1	0	0	1	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0015	1560	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211