JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEACAM6_chr19_41750530_41777211	0/0	t0016	1560	1	0	0	1	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0017	1560	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0018	1560	1	0	0	1	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	t0019	1560	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM7_chr19_41668303_41693270	1/1	t0001	1579	364	53	75	172	16	46	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0002	1579	9	8	1	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0003	1579	8	0	0	8	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0004	1579	6	6	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0005	1579	6	5	1	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0006	1579	5	5	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0007	1579	5	5	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0008	1578	4	4	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0009	1579	1	1	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0010	1579	1	0	1	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0011	1579	1	0	0	1	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0012	1579	1	1	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	t0013	1579	1	0	0	1	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM8_chr19_42575243_42599924	1/0	t0001	1248	164	47	33	49	13	21	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/1	t0002	1249	113	9	42	35	5	21	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	t0003	1249	18	17	1	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	t0004	1247	11	9	2	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	t0005	1248	5	5	0	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	t0006	1249	1	0	0	1	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	t0007	1249	1	0	0	1	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	t0008	1249	1	1	0	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEBPA_chr19_33294934_33307534	1/0	t0001	1525	346	57	73	158	13	44	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	t0002	1525	46	0	1	41	0	4	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/1	t0003	1525	37	22	4	3	5	2	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	t0004	1525	7	7	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	t0005	1525	7	7	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	t0006	1525	1	1	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	t0007	1525	1	0	0	1	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	t0008	1525	1	1	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	t0009	1525	1	1	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	t0010	1525	1	1	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	t0011	1525	1	0	0	1	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	t0012	1525	1	1	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPB_chr20_50185830_50197668	1/1	t0001	802	353	78	73	142	16	42	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	t0002	801	21	12	3	4	0	2	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	t0003	802	3	0	3	0	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	t0004	802	2	0	0	2	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	t0005	802	1	0	0	1	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	t0006	802	1	0	0	1	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	t0007	802	1	0	1	0	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	t0008	801	1	1	0	0	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	t0009	801	1	1	0	0	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPD_chr8_47731913_47743164	1/1	t0001	443	315	90	58	116	14	35	copy fasta	CEBPD	chr8	47731913	47743164
CEBPD_chr8_47731913_47743164	0/0	t0002	443	1	0	0	0	0	1	copy fasta	CEBPD	chr8	47731913	47743164
CEBPE_chr14_23112306_23124255	1/1	t0001	346	425	95	73	196	13	46	copy fasta	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	t0002	346	29	1	4	21	1	2	copy fasta	CEBPE	chr14	23112306	23124255