JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEBPE_chr14_23112306_23124255	0/0	t0003	346	2	0	0	2	0	0	copy fasta	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	t0004	346	1	0	0	1	0	0	copy fasta	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	t0005	346	1	0	1	0	0	0	copy fasta	CEBPE	chr14	23112306	23124255
CEBPG_chr19_33368709_33387686	1/0	t0001	3278	283	31	33	177	11	30	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0002	3278	41	36	5	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/1	t0003	3278	31	1	22	0	3	4	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0004	3278	26	13	6	2	1	4	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0005	3273	22	1	0	20	0	1	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0006	3278	6	0	0	6	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0007	3278	5	0	0	3	1	1	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0008	3273	5	5	0	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0009	3278	4	4	0	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0010	3278	3	1	2	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0011	3278	1	0	0	0	0	1	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0012	3273	1	1	0	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0013	3273	1	0	1	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0014	3278	1	1	0	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0015	3278	1	1	0	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0016	3278	1	0	1	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0017	3278	1	0	1	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0018	3278	1	0	1	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0019	3278	1	0	0	0	0	1	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	t0020	3278	1	1	0	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPZOS_chr2_37191496_37209743	0/1	t0001	2885	80	9	14	47	7	2	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0002	2887	61	0	9	51	0	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0003	2866	48	9	17	7	2	13	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0004	2866	26	0	0	20	0	6	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	1/0	t0005	2909	19	5	2	7	1	3	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0006	2886	16	1	2	12	0	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0007	2888	15	0	1	12	0	2	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0008	2885	14	0	1	13	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0009	2888	11	0	0	10	0	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0010	2886	11	0	1	8	0	2	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0011	2889	8	8	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0012	2898	7	7	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0013	2886	7	0	1	6	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0014	2886	5	0	0	5	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0015	2897	5	4	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0016	2884	5	2	0	3	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0017	2908	4	1	0	0	2	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0018	2889	4	4	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0019	2886	4	0	2	0	1	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0020	2867	4	0	0	4	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0021	2889	3	0	0	3	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0022	2899	3	0	1	1	1	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0023	2896	3	3	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0024	2890	3	3	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0025	2879	3	0	2	0	0	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0026	2909	3	3	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0027	2910	2	0	0	0	0	2	copy fasta	CEBPZOS	chr2	37191496	37209743