JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEBPZOS_chr2_37191496_37209743	0/0	t0028	2909	2	2	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0029	2900	2	0	2	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0030	2890	2	2	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0031	2890	2	1	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0032	2887	2	0	1	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0033	2886	2	0	1	0	0	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0034	2886	2	0	0	0	1	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0035	2884	2	2	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0036	2867	2	0	1	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0037	2867	2	0	0	2	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0038	2867	2	0	0	0	0	2	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0039	2867	2	0	1	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0040	2886	2	0	0	2	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0041	2910	2	1	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0042	2886	2	0	0	1	1	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0043	2887	2	0	2	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0044	2889	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0045	2887	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0046	2886	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0047	2876	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0048	2888	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0049	2920	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0050	2909	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0051	2909	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0052	2899	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0053	2899	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0054	2897	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0055	2896	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0056	2895	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0057	2894	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0058	2892	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0059	2890	1	0	0	0	0	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0060	2891	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0061	2890	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0062	2887	1	0	0	0	0	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0063	2889	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0064	2888	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0065	2888	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0066	2888	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0067	2887	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0068	2887	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0069	2885	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0070	2886	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0071	2886	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0072	2886	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0073	2885	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0074	2885	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0075	2883	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0076	2880	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0077	2877	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743